# coding: utf-8
"""Scikit-learn wrapper interface for LightGBM."""
import copy
from inspect import signature
from typing import Callable, Dict, Optional, Union
import numpy as np
from .basic import Dataset, LightGBMError, _choose_param_value, _ConfigAliases, _log_warning
from .callback import log_evaluation, record_evaluation
from .compat import (SKLEARN_INSTALLED, LGBMNotFittedError, _LGBMAssertAllFinite, _LGBMCheckArray,
_LGBMCheckClassificationTargets, _LGBMCheckSampleWeight, _LGBMCheckXY, _LGBMClassifierBase,
_LGBMComputeSampleWeight, _LGBMLabelEncoder, _LGBMModelBase, _LGBMRegressorBase, dt_DataTable,
pd_DataFrame)
from .engine import train
class _ObjectiveFunctionWrapper:
"""Proxy class for objective function."""
def __init__(self, func):
"""Construct a proxy class.
This class transforms objective function to match objective function with signature ``new_func(preds, dataset)``
as expected by ``lightgbm.engine.train``.
Parameters
----------
func : callable
Expects a callable with signature ``func(y_true, y_pred)`` or ``func(y_true, y_pred, group)``
and returns (grad, hess):
y_true : array-like of shape = [n_samples]
The target values.
y_pred : array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
The predicted values.
Predicted values are returned before any transformation,
e.g. they are raw margin instead of probability of positive class for binary task.
group : array-like
Group/query data.
Only used in the learning-to-rank task.
sum(group) = n_samples.
For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
grad : array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
The value of the first order derivative (gradient) of the loss
with respect to the elements of y_pred for each sample point.
hess : array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
The value of the second order derivative (Hessian) of the loss
with respect to the elements of y_pred for each sample point.
.. note::
For multi-class task, the y_pred is group by class_id first, then group by row_id.
If you want to get i-th row y_pred in j-th class, the access way is y_pred[j * num_data + i]
and you should group grad and hess in this way as well.
"""
self.func = func
def __call__(self, preds, dataset):
"""Call passed function with appropriate arguments.
Parameters
----------
preds : array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
The predicted values.
dataset : Dataset
The training dataset.
Returns
-------
grad : array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
The value of the first order derivative (gradient) of the loss
with respect to the elements of preds for each sample point.
hess : array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
The value of the second order derivative (Hessian) of the loss
with respect to the elements of preds for each sample point.
"""
labels = dataset.get_label()
argc = len(signature(self.func).parameters)
if argc == 2:
grad, hess = self.func(labels, preds)
elif argc == 3:
grad, hess = self.func(labels, preds, dataset.get_group())
else:
raise TypeError(f"Self-defined objective function should have 2 or 3 arguments, got {argc}")
"""weighted for objective"""
weight = dataset.get_weight()
if weight is not None:
"""only one class"""
if len(weight) == len(grad):
grad = np.multiply(grad, weight)
hess = np.multiply(hess, weight)
else:
num_data = len(weight)
num_class = len(grad) // num_data
if num_class * num_data != len(grad):
raise ValueError("Length of grad and hess should equal to num_class * num_data")
for k in range(num_class):
for i in range(num_data):
idx = k * num_data + i
grad[idx] *= weight[i]
hess[idx] *= weight[i]
return grad, hess
class _EvalFunctionWrapper:
"""Proxy class for evaluation function."""
def __init__(self, func):
"""Construct a proxy class.
This class transforms evaluation function to match evaluation function with signature ``new_func(preds, dataset)``
as expected by ``lightgbm.engine.train``.
Parameters
----------
func : callable
Expects a callable with following signatures:
``func(y_true, y_pred)``,
``func(y_true, y_pred, weight)``
or ``func(y_true, y_pred, weight, group)``
and returns (eval_name, eval_result, is_higher_better) or
list of (eval_name, eval_result, is_higher_better):
y_true : array-like of shape = [n_samples]
The target values.
y_pred : array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
The predicted values.
In case of custom ``objective``, predicted values are returned before any transformation,
e.g. they are raw margin instead of probability of positive class for binary task in this case.
weight : array-like of shape = [n_samples]
The weight of samples.
group : array-like
Group/query data.
Only used in the learning-to-rank task.
sum(group) = n_samples.
For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
eval_name : str
The name of evaluation function (without whitespace).
eval_result : float
The eval result.
is_higher_better : bool
Is eval result higher better, e.g. AUC is ``is_higher_better``.
.. note::
For multi-class task, the y_pred is group by class_id first, then group by row_id.
If you want to get i-th row y_pred in j-th class, the access way is y_pred[j * num_data + i].
"""
self.func = func
def __call__(self, preds, dataset):
"""Call passed function with appropriate arguments.
Parameters
----------
preds : array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
The predicted values.
dataset : Dataset
The training dataset.
Returns
-------
eval_name : str
The name of evaluation function (without whitespace).
eval_result : float
The eval result.
is_higher_better : bool
Is eval result higher better, e.g. AUC is ``is_higher_better``.
"""
labels = dataset.get_label()
argc = len(signature(self.func).parameters)
if argc == 2:
return self.func(labels, preds)
elif argc == 3:
return self.func(labels, preds, dataset.get_weight())
elif argc == 4:
return self.func(labels, preds, dataset.get_weight(), dataset.get_group())
else:
raise TypeError(f"Self-defined eval function should have 2, 3 or 4 arguments, got {argc}")
# documentation templates for LGBMModel methods are shared between the classes in
# this module and those in the ``dask`` module
_lgbmmodel_doc_fit = (
"""
Build a gradient boosting model from the training set (X, y).
Parameters
----------
X : {X_shape}
Input feature matrix.
y : {y_shape}
The target values (class labels in classification, real numbers in regression).
sample_weight : {sample_weight_shape}
Weights of training data.
init_score : {init_score_shape}
Init score of training data.
group : {group_shape}
Group/query data.
Only used in the learning-to-rank task.
sum(group) = n_samples.
For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
eval_set : list or None, optional (default=None)
A list of (X, y) tuple pairs to use as validation sets.
eval_names : list of str, or None, optional (default=None)
Names of eval_set.
eval_sample_weight : {eval_sample_weight_shape}
Weights of eval data.
eval_class_weight : list or None, optional (default=None)
Class weights of eval data.
eval_init_score : {eval_init_score_shape}
Init score of eval data.
eval_group : {eval_group_shape}
Group data of eval data.
eval_metric : str, callable, list or None, optional (default=None)
If str, it should be a built-in evaluation metric to use.
If callable, it should be a custom evaluation metric, see note below for more details.
If list, it can be a list of built-in metrics, a list of custom evaluation metrics, or a mix of both.
In either case, the ``metric`` from the model parameters will be evaluated and used as well.
Default: 'l2' for LGBMRegressor, 'logloss' for LGBMClassifier, 'ndcg' for LGBMRanker.
early_stopping_rounds : int or None, optional (default=None)
Activates early stopping. The model will train until the validation score stops improving.
Validation score needs to improve at least every ``early_stopping_rounds`` round(s)
to continue training.
Requires at least one validation data and one metric.
If there's more than one, will check all of them. But the training data is ignored anyway.
To check only the first metric, set the ``first_metric_only`` parameter to ``True``
in additional parameters ``**kwargs`` of the model constructor.
verbose : bool or int, optional (default=True)
Requires at least one evaluation data.
If True, the eval metric on the eval set is printed at each boosting stage.
If int, the eval metric on the eval set is printed at every ``verbose`` boosting stage.
The last boosting stage or the boosting stage found by using ``early_stopping_rounds`` is also printed.
.. rubric:: Example
With ``verbose`` = 4 and at least one item in ``eval_set``,
an evaluation metric is printed every 4 (instead of 1) boosting stages.
feature_name : list of str, or 'auto', optional (default='auto')
Feature names.
If 'auto' and data is pandas DataFrame, data columns names are used.
categorical_feature : list of str or int, or 'auto', optional (default='auto')
Categorical features.
If list of int, interpreted as indices.
If list of str, interpreted as feature names (need to specify ``feature_name`` as well).
If 'auto' and data is pandas DataFrame, pandas unordered categorical columns are used.
All values in categorical features should be less than int32 max value (2147483647).
Large values could be memory consuming. Consider using consecutive integers starting from zero.
All negative values in categorical features will be treated as missing values.
The output cannot be monotonically constrained with respect to a categorical feature.
callbacks : list of callable, or None, optional (default=None)
List of callback functions that are applied at each iteration.
See Callbacks in Python API for more information.
init_model : str, pathlib.Path, Booster, LGBMModel or None, optional (default=None)
Filename of LightGBM model, Booster instance or LGBMModel instance used for continue training.
Returns
-------
self : object
Returns self.
"""
)
_lgbmmodel_doc_custom_eval_note = """
Note
----
Custom eval function expects a callable with following signatures:
``func(y_true, y_pred)``, ``func(y_true, y_pred, weight)`` or
``func(y_true, y_pred, weight, group)``
and returns (eval_name, eval_result, is_higher_better) or
list of (eval_name, eval_result, is_higher_better):
y_true : array-like of shape = [n_samples]
The target values.
y_pred : array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
The predicted values.
In case of custom ``objective``, predicted values are returned before any transformation,
e.g. they are raw margin instead of probability of positive class for binary task in this case.
weight : array-like of shape = [n_samples]
The weight of samples.
group : array-like
Group/query data.
Only used in the learning-to-rank task.
sum(group) = n_samples.
For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
eval_name : str
The name of evaluation function (without whitespace).
eval_result : float
The eval result.
is_higher_better : bool
Is eval result higher better, e.g. AUC is ``is_higher_better``.
For multi-class task, the y_pred is group by class_id first, then group by row_id.
If you want to get i-th row y_pred in j-th class, the access way is y_pred[j * num_data + i].
"""
_lgbmmodel_doc_predict = (
"""
{description}
Parameters
----------
X : {X_shape}
Input features matrix.
raw_score : bool, optional (default=False)
Whether to predict raw scores.
start_iteration : int, optional (default=0)
Start index of the iteration to predict.
If <= 0, starts from the first iteration.
num_iteration : int or None, optional (default=None)
Total number of iterations used in the prediction.
If None, if the best iteration exists and start_iteration <= 0, the best iteration is used;
otherwise, all iterations from ``start_iteration`` are used (no limits).
If <= 0, all iterations from ``start_iteration`` are used (no limits).
pred_leaf : bool, optional (default=False)
Whether to predict leaf index.
pred_contrib : bool, optional (default=False)
Whether to predict feature contributions.
.. note::
If you want to get more explanations for your model's predictions using SHAP values,
like SHAP interaction values,
you can install the shap package (https://github.com/slundberg/shap).
Note that unlike the shap package, with ``pred_contrib`` we return a matrix with an extra
column, where the last column is the expected value.
**kwargs
Other parameters for the prediction.
Returns
-------
{output_name} : {predicted_result_shape}
The predicted values.
X_leaves : {X_leaves_shape}
If ``pred_leaf=True``, the predicted leaf of every tree for each sample.
X_SHAP_values : {X_SHAP_values_shape}
If ``pred_contrib=True``, the feature contributions for each sample.
"""
)
[docs]class LGBMModel(_LGBMModelBase):
"""Implementation of the scikit-learn API for LightGBM."""
[docs] def __init__(
self,
boosting_type: str = 'gbdt',
num_leaves: int = 31,
max_depth: int = -1,
learning_rate: float = 0.1,
n_estimators: int = 100,
subsample_for_bin: int = 200000,
objective: Optional[Union[str, Callable]] = None,
class_weight: Optional[Union[Dict, str]] = None,
min_split_gain: float = 0.,
min_child_weight: float = 1e-3,
min_child_samples: int = 20,
subsample: float = 1.,
subsample_freq: int = 0,
colsample_bytree: float = 1.,
reg_alpha: float = 0.,
reg_lambda: float = 0.,
random_state: Optional[Union[int, np.random.RandomState]] = None,
n_jobs: int = -1,
silent: Union[bool, str] = 'warn',
importance_type: str = 'split',
**kwargs
):
r"""Construct a gradient boosting model.
Parameters
----------
boosting_type : str, optional (default='gbdt')
'gbdt', traditional Gradient Boosting Decision Tree.
'dart', Dropouts meet Multiple Additive Regression Trees.
'goss', Gradient-based One-Side Sampling.
'rf', Random Forest.
num_leaves : int, optional (default=31)
Maximum tree leaves for base learners.
max_depth : int, optional (default=-1)
Maximum tree depth for base learners, <=0 means no limit.
learning_rate : float, optional (default=0.1)
Boosting learning rate.
You can use ``callbacks`` parameter of ``fit`` method to shrink/adapt learning rate
in training using ``reset_parameter`` callback.
Note, that this will ignore the ``learning_rate`` argument in training.
n_estimators : int, optional (default=100)
Number of boosted trees to fit.
subsample_for_bin : int, optional (default=200000)
Number of samples for constructing bins.
objective : str, callable or None, optional (default=None)
Specify the learning task and the corresponding learning objective or
a custom objective function to be used (see note below).
Default: 'regression' for LGBMRegressor, 'binary' or 'multiclass' for LGBMClassifier, 'lambdarank' for LGBMRanker.
class_weight : dict, 'balanced' or None, optional (default=None)
Weights associated with classes in the form ``{class_label: weight}``.
Use this parameter only for multi-class classification task;
for binary classification task you may use ``is_unbalance`` or ``scale_pos_weight`` parameters.
Note, that the usage of all these parameters will result in poor estimates of the individual class probabilities.
You may want to consider performing probability calibration
(https://scikit-learn.org/stable/modules/calibration.html) of your model.
The 'balanced' mode uses the values of y to automatically adjust weights
inversely proportional to class frequencies in the input data as ``n_samples / (n_classes * np.bincount(y))``.
If None, all classes are supposed to have weight one.
Note, that these weights will be multiplied with ``sample_weight`` (passed through the ``fit`` method)
if ``sample_weight`` is specified.
min_split_gain : float, optional (default=0.)
Minimum loss reduction required to make a further partition on a leaf node of the tree.
min_child_weight : float, optional (default=1e-3)
Minimum sum of instance weight (hessian) needed in a child (leaf).
min_child_samples : int, optional (default=20)
Minimum number of data needed in a child (leaf).
subsample : float, optional (default=1.)
Subsample ratio of the training instance.
subsample_freq : int, optional (default=0)
Frequency of subsample, <=0 means no enable.
colsample_bytree : float, optional (default=1.)
Subsample ratio of columns when constructing each tree.
reg_alpha : float, optional (default=0.)
L1 regularization term on weights.
reg_lambda : float, optional (default=0.)
L2 regularization term on weights.
random_state : int, RandomState object or None, optional (default=None)
Random number seed.
If int, this number is used to seed the C++ code.
If RandomState object (numpy), a random integer is picked based on its state to seed the C++ code.
If None, default seeds in C++ code are used.
n_jobs : int, optional (default=-1)
Number of parallel threads.
silent : bool, optional (default=True)
Whether to print messages while running boosting.
importance_type : str, optional (default='split')
The type of feature importance to be filled into ``feature_importances_``.
If 'split', result contains numbers of times the feature is used in a model.
If 'gain', result contains total gains of splits which use the feature.
**kwargs
Other parameters for the model.
Check http://lightgbm.readthedocs.io/en/latest/Parameters.html for more parameters.
.. warning::
\*\*kwargs is not supported in sklearn, it may cause unexpected issues.
Note
----
A custom objective function can be provided for the ``objective`` parameter.
In this case, it should have the signature
``objective(y_true, y_pred) -> grad, hess`` or
``objective(y_true, y_pred, group) -> grad, hess``:
y_true : array-like of shape = [n_samples]
The target values.
y_pred : array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
The predicted values.
Predicted values are returned before any transformation,
e.g. they are raw margin instead of probability of positive class for binary task.
group : array-like
Group/query data.
Only used in the learning-to-rank task.
sum(group) = n_samples.
For example, if you have a 100-document dataset with ``group = [10, 20, 40, 10, 10, 10]``, that means that you have 6 groups,
where the first 10 records are in the first group, records 11-30 are in the second group, records 31-70 are in the third group, etc.
grad : array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
The value of the first order derivative (gradient) of the loss
with respect to the elements of y_pred for each sample point.
hess : array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task)
The value of the second order derivative (Hessian) of the loss
with respect to the elements of y_pred for each sample point.
For multi-class task, the y_pred is group by class_id first, then group by row_id.
If you want to get i-th row y_pred in j-th class, the access way is y_pred[j * num_data + i]
and you should group grad and hess in this way as well.
"""
if not SKLEARN_INSTALLED:
raise LightGBMError('scikit-learn is required for lightgbm.sklearn. '
'You must install scikit-learn and restart your session to use this module.')
self.boosting_type = boosting_type
self.objective = objective
self.num_leaves = num_leaves
self.max_depth = max_depth
self.learning_rate = learning_rate
self.n_estimators = n_estimators
self.subsample_for_bin = subsample_for_bin
self.min_split_gain = min_split_gain
self.min_child_weight = min_child_weight
self.min_child_samples = min_child_samples
self.subsample = subsample
self.subsample_freq = subsample_freq
self.colsample_bytree = colsample_bytree
self.reg_alpha = reg_alpha
self.reg_lambda = reg_lambda
self.random_state = random_state
self.n_jobs = n_jobs
self.silent = silent
self.importance_type = importance_type
self._Booster = None
self._evals_result = None
self._best_score = None
self._best_iteration = None
self._other_params = {}
self._objective = objective
self.class_weight = class_weight
self._class_weight = None
self._class_map = None
self._n_features = None
self._n_features_in = None
self._classes = None
self._n_classes = None
self.set_params(**kwargs)
def _more_tags(self):
return {
'allow_nan': True,
'X_types': ['2darray', 'sparse', '1dlabels'],
'_xfail_checks': {
'check_no_attributes_set_in_init':
'scikit-learn incorrectly asserts that private attributes '
'cannot be set in __init__: '
'(see https://github.com/microsoft/LightGBM/issues/2628)'
}
}
def __sklearn_is_fitted__(self) -> bool:
return getattr(self, "fitted_", False)
[docs] def get_params(self, deep=True):
"""Get parameters for this estimator.
Parameters
----------
deep : bool, optional (default=True)
If True, will return the parameters for this estimator and
contained subobjects that are estimators.
Returns
-------
params : dict
Parameter names mapped to their values.
"""
params = super().get_params(deep=deep)
params.update(self._other_params)
return params
[docs] def set_params(self, **params):
"""Set the parameters of this estimator.
Parameters
----------
**params
Parameter names with their new values.
Returns
-------
self : object
Returns self.
"""
for key, value in params.items():
setattr(self, key, value)
if hasattr(self, f"_{key}"):
setattr(self, f"_{key}", value)
self._other_params[key] = value
return self
[docs] def fit(self, X, y,
sample_weight=None, init_score=None, group=None,
eval_set=None, eval_names=None, eval_sample_weight=None,
eval_class_weight=None, eval_init_score=None, eval_group=None,
eval_metric=None, early_stopping_rounds=None, verbose='warn',
feature_name='auto', categorical_feature='auto',
callbacks=None, init_model=None):
"""Docstring is set after definition, using a template."""
if self._objective is None:
if isinstance(self, LGBMRegressor):
self._objective = "regression"
elif isinstance(self, LGBMClassifier):
self._objective = "binary"
elif isinstance(self, LGBMRanker):
self._objective = "lambdarank"
else:
raise ValueError("Unknown LGBMModel type.")
if callable(self._objective):
self._fobj = _ObjectiveFunctionWrapper(self._objective)
else:
self._fobj = None
params = self.get_params()
# user can set verbose with kwargs, it has higher priority
if self.silent != "warn":
_log_warning("'silent' argument is deprecated and will be removed in a future release of LightGBM. "
"Pass 'verbose' parameter via keyword arguments instead.")
silent = self.silent
else:
silent = True
if not any(verbose_alias in params for verbose_alias in _ConfigAliases.get("verbosity")) and silent:
params['verbose'] = -1
params.pop('silent', None)
params.pop('importance_type', None)
params.pop('n_estimators', None)
params.pop('class_weight', None)
if isinstance(params['random_state'], np.random.RandomState):
params['random_state'] = params['random_state'].randint(np.iinfo(np.int32).max)
for alias in _ConfigAliases.get('objective'):
params.pop(alias, None)
if self._n_classes is not None and self._n_classes > 2:
for alias in _ConfigAliases.get('num_class'):
params.pop(alias, None)
params['num_class'] = self._n_classes
if hasattr(self, '_eval_at'):
eval_at = self._eval_at
for alias in _ConfigAliases.get('eval_at'):
if alias in params:
_log_warning(f"Found '{alias}' in params. Will use it instead of 'eval_at' argument")
eval_at = params.pop(alias)
params['eval_at'] = eval_at
params['objective'] = self._objective
if self._fobj:
params['objective'] = 'None' # objective = nullptr for unknown objective
# Do not modify original args in fit function
# Refer to https://github.com/microsoft/LightGBM/pull/2619
eval_metric_list = copy.deepcopy(eval_metric)
if not isinstance(eval_metric_list, list):
eval_metric_list = [eval_metric_list]
# Separate built-in from callable evaluation metrics
eval_metrics_callable = [_EvalFunctionWrapper(f) for f in eval_metric_list if callable(f)]
eval_metrics_builtin = [m for m in eval_metric_list if isinstance(m, str)]
# register default metric for consistency with callable eval_metric case
original_metric = self._objective if isinstance(self._objective, str) else None
if original_metric is None:
# try to deduce from class instance
if isinstance(self, LGBMRegressor):
original_metric = "l2"
elif isinstance(self, LGBMClassifier):
original_metric = "multi_logloss" if self._n_classes > 2 else "binary_logloss"
elif isinstance(self, LGBMRanker):
original_metric = "ndcg"
# overwrite default metric by explicitly set metric
params = _choose_param_value("metric", params, original_metric)
# concatenate metric from params (or default if not provided in params) and eval_metric
params['metric'] = [params['metric']] if isinstance(params['metric'], (str, type(None))) else params['metric']
params['metric'] = [e for e in eval_metrics_builtin if e not in params['metric']] + params['metric']
params['metric'] = [metric for metric in params['metric'] if metric is not None]
if not isinstance(X, (pd_DataFrame, dt_DataTable)):
_X, _y = _LGBMCheckXY(X, y, accept_sparse=True, force_all_finite=False, ensure_min_samples=2)
if sample_weight is not None:
sample_weight = _LGBMCheckSampleWeight(sample_weight, _X)
else:
_X, _y = X, y
if self._class_weight is None:
self._class_weight = self.class_weight
if self._class_weight is not None:
class_sample_weight = _LGBMComputeSampleWeight(self._class_weight, y)
if sample_weight is None or len(sample_weight) == 0:
sample_weight = class_sample_weight
else:
sample_weight = np.multiply(sample_weight, class_sample_weight)
self._n_features = _X.shape[1]
# copy for consistency
self._n_features_in = self._n_features
def _construct_dataset(X, y, sample_weight, init_score, group, params,
categorical_feature='auto'):
return Dataset(X, label=y, weight=sample_weight, group=group,
init_score=init_score, params=params,
categorical_feature=categorical_feature)
train_set = _construct_dataset(_X, _y, sample_weight, init_score, group, params,
categorical_feature=categorical_feature)
valid_sets = []
if eval_set is not None:
def _get_meta_data(collection, name, i):
if collection is None:
return None
elif isinstance(collection, list):
return collection[i] if len(collection) > i else None
elif isinstance(collection, dict):
return collection.get(i, None)
else:
raise TypeError(f"{name} should be dict or list")
if isinstance(eval_set, tuple):
eval_set = [eval_set]
for i, valid_data in enumerate(eval_set):
# reduce cost for prediction training data
if valid_data[0] is X and valid_data[1] is y:
valid_set = train_set
else:
valid_weight = _get_meta_data(eval_sample_weight, 'eval_sample_weight', i)
valid_class_weight = _get_meta_data(eval_class_weight, 'eval_class_weight', i)
if valid_class_weight is not None:
if isinstance(valid_class_weight, dict) and self._class_map is not None:
valid_class_weight = {self._class_map[k]: v for k, v in valid_class_weight.items()}
valid_class_sample_weight = _LGBMComputeSampleWeight(valid_class_weight, valid_data[1])
if valid_weight is None or len(valid_weight) == 0:
valid_weight = valid_class_sample_weight
else:
valid_weight = np.multiply(valid_weight, valid_class_sample_weight)
valid_init_score = _get_meta_data(eval_init_score, 'eval_init_score', i)
valid_group = _get_meta_data(eval_group, 'eval_group', i)
valid_set = _construct_dataset(valid_data[0], valid_data[1],
valid_weight, valid_init_score, valid_group, params)
valid_sets.append(valid_set)
if isinstance(init_model, LGBMModel):
init_model = init_model.booster_
if early_stopping_rounds is not None and early_stopping_rounds > 0:
_log_warning("'early_stopping_rounds' argument is deprecated and will be removed in a future release of LightGBM. "
"Pass 'early_stopping()' callback via 'callbacks' argument instead.")
params['early_stopping_rounds'] = early_stopping_rounds
if callbacks is None:
callbacks = []
else:
callbacks = copy.copy(callbacks) # don't use deepcopy here to allow non-serializable objects
if verbose != 'warn':
_log_warning("'verbose' argument is deprecated and will be removed in a future release of LightGBM. "
"Pass 'log_evaluation()' callback via 'callbacks' argument instead.")
else:
if callbacks: # assume user has already specified log_evaluation callback
verbose = False
else:
verbose = True
callbacks.append(log_evaluation(int(verbose)))
evals_result = {}
callbacks.append(record_evaluation(evals_result))
self._Booster = train(
params=params,
train_set=train_set,
num_boost_round=self.n_estimators,
valid_sets=valid_sets,
valid_names=eval_names,
fobj=self._fobj,
feval=eval_metrics_callable,
init_model=init_model,
feature_name=feature_name,
callbacks=callbacks
)
if evals_result:
self._evals_result = evals_result
else: # reset after previous call to fit()
self._evals_result = None
if self._Booster.best_iteration != 0:
self._best_iteration = self._Booster.best_iteration
else: # reset after previous call to fit()
self._best_iteration = None
self._best_score = self._Booster.best_score
self.fitted_ = True
# free dataset
self._Booster.free_dataset()
del train_set, valid_sets
return self
fit.__doc__ = _lgbmmodel_doc_fit.format(
X_shape="array-like or sparse matrix of shape = [n_samples, n_features]",
y_shape="array-like of shape = [n_samples]",
sample_weight_shape="array-like of shape = [n_samples] or None, optional (default=None)",
init_score_shape="array-like of shape = [n_samples] or shape = [n_samples * n_classes] (for multi-class task) or shape = [n_samples, n_classes] (for multi-class task) or None, optional (default=None)",
group_shape="array-like or None, optional (default=None)",
eval_sample_weight_shape="list of array, or None, optional (default=None)",
eval_init_score_shape="list of array, or None, optional (default=None)",
eval_group_shape="list of array, or None, optional (default=None)"
) + "\n\n" + _lgbmmodel_doc_custom_eval_note
[docs] def predict(self, X, raw_score=False, start_iteration=0, num_iteration=None,
pred_leaf=False, pred_contrib=False, **kwargs):
"""Docstring is set after definition, using a template."""
if not self.__sklearn_is_fitted__():
raise LGBMNotFittedError("Estimator not fitted, call fit before exploiting the model.")
if not isinstance(X, (pd_DataFrame, dt_DataTable)):
X = _LGBMCheckArray(X, accept_sparse=True, force_all_finite=False)
n_features = X.shape[1]
if self._n_features != n_features:
raise ValueError("Number of features of the model must "
f"match the input. Model n_features_ is {self._n_features} and "
f"input n_features is {n_features}")
return self._Booster.predict(X, raw_score=raw_score, start_iteration=start_iteration, num_iteration=num_iteration,
pred_leaf=pred_leaf, pred_contrib=pred_contrib, **kwargs)
predict.__doc__ = _lgbmmodel_doc_predict.format(
description="Return the predicted value for each sample.",
X_shape="array-like or sparse matrix of shape = [n_samples, n_features]",
output_name="predicted_result",
predicted_result_shape="array-like of shape = [n_samples] or shape = [n_samples, n_classes]",
X_leaves_shape="array-like of shape = [n_samples, n_trees] or shape = [n_samples, n_trees * n_classes]",
X_SHAP_values_shape="array-like of shape = [n_samples, n_features + 1] or shape = [n_samples, (n_features + 1) * n_classes] or list with n_classes length of such objects"
)
@property
def n_features_(self):
""":obj:`int`: The number of features of fitted model."""
if not self.__sklearn_is_fitted__():
raise LGBMNotFittedError('No n_features found. Need to call fit beforehand.')
return self._n_features
@property
def n_features_in_(self):
""":obj:`int`: The number of features of fitted model."""
if not self.__sklearn_is_fitted__():
raise LGBMNotFittedError('No n_features_in found. Need to call fit beforehand.')
return self._n_features_in
@property
def best_score_(self):
""":obj:`dict`: The best score of fitted model."""
if not self.__sklearn_is_fitted__():
raise LGBMNotFittedError('No best_score found. Need to call fit beforehand.')
return self._best_score
@property
def best_iteration_(self):
""":obj:`int` or :obj:`None`: The best iteration of fitted model if ``early_stopping()`` callback has been specified."""
if not self.__sklearn_is_fitted__():
raise LGBMNotFittedError('No best_iteration found. Need to call fit with early_stopping callback beforehand.')
return self._best_iteration
@property
def objective_(self):
""":obj:`str` or :obj:`callable`: The concrete objective used while fitting this model."""
if not self.__sklearn_is_fitted__():
raise LGBMNotFittedError('No objective found. Need to call fit beforehand.')
return self._objective
@property
def booster_(self):
"""Booster: The underlying Booster of this model."""
if not self.__sklearn_is_fitted__():
raise LGBMNotFittedError('No booster found. Need to call fit beforehand.')
return self._Booster
@property
def evals_result_(self):
""":obj:`dict` or :obj:`None`: The evaluation results if validation sets have been specified."""
if not self.__sklearn_is_fitted__():
raise LGBMNotFittedError('No results found. Need to call fit with eval_set beforehand.')
return self._evals_result
@property
def feature_importances_(self):
""":obj:`array` of shape = [n_features]: The feature importances (the higher, the more important).
.. note::
``importance_type`` attribute is passed to the function
to configure the type of importance values to be extracted.
"""
if not self.__sklearn_is_fitted__():
raise LGBMNotFittedError('No feature_importances found. Need to call fit beforehand.')
return self._Booster.feature_importance(importance_type=self.importance_type)
@property
def feature_name_(self):
""":obj:`array` of shape = [n_features]: The names of features."""
if not self.__sklearn_is_fitted__():
raise LGBMNotFittedError('No feature_name found. Need to call fit beforehand.')
return self._Booster.feature_name()
[docs]class LGBMRegressor(_LGBMRegressorBase, LGBMModel):
"""LightGBM regressor."""
[docs] def fit(self, X, y,
sample_weight=None, init_score=None,
eval_set=None, eval_names=None, eval_sample_weight=None,
eval_init_score=None, eval_metric=None, early_stopping_rounds=None,
verbose='warn', feature_name='auto', categorical_feature='auto',
callbacks=None, init_model=None):
"""Docstring is inherited from the LGBMModel."""
super().fit(X, y, sample_weight=sample_weight, init_score=init_score,
eval_set=eval_set, eval_names=eval_names, eval_sample_weight=eval_sample_weight,
eval_init_score=eval_init_score, eval_metric=eval_metric,
early_stopping_rounds=early_stopping_rounds, verbose=verbose, feature_name=feature_name,
categorical_feature=categorical_feature, callbacks=callbacks, init_model=init_model)
return self
_base_doc = LGBMModel.fit.__doc__
_base_doc = (_base_doc[:_base_doc.find('group :')] # type: ignore
+ _base_doc[_base_doc.find('eval_set :'):]) # type: ignore
_base_doc = (_base_doc[:_base_doc.find('eval_class_weight :')]
+ _base_doc[_base_doc.find('eval_init_score :'):])
fit.__doc__ = (_base_doc[:_base_doc.find('eval_group :')]
+ _base_doc[_base_doc.find('eval_metric :'):])
[docs]class LGBMClassifier(_LGBMClassifierBase, LGBMModel):
"""LightGBM classifier."""
[docs] def fit(self, X, y,
sample_weight=None, init_score=None,
eval_set=None, eval_names=None, eval_sample_weight=None,
eval_class_weight=None, eval_init_score=None, eval_metric=None,
early_stopping_rounds=None, verbose='warn',
feature_name='auto', categorical_feature='auto',
callbacks=None, init_model=None):
"""Docstring is inherited from the LGBMModel."""
_LGBMAssertAllFinite(y)
_LGBMCheckClassificationTargets(y)
self._le = _LGBMLabelEncoder().fit(y)
_y = self._le.transform(y)
self._class_map = dict(zip(self._le.classes_, self._le.transform(self._le.classes_)))
if isinstance(self.class_weight, dict):
self._class_weight = {self._class_map[k]: v for k, v in self.class_weight.items()}
self._classes = self._le.classes_
self._n_classes = len(self._classes)
if self._n_classes > 2:
# Switch to using a multiclass objective in the underlying LGBM instance
ova_aliases = {"multiclassova", "multiclass_ova", "ova", "ovr"}
if self._objective not in ova_aliases and not callable(self._objective):
self._objective = "multiclass"
if not callable(eval_metric):
if isinstance(eval_metric, (str, type(None))):
eval_metric = [eval_metric]
if self._n_classes > 2:
for index, metric in enumerate(eval_metric):
if metric in {'logloss', 'binary_logloss'}:
eval_metric[index] = "multi_logloss"
elif metric in {'error', 'binary_error'}:
eval_metric[index] = "multi_error"
else:
for index, metric in enumerate(eval_metric):
if metric in {'logloss', 'multi_logloss'}:
eval_metric[index] = 'binary_logloss'
elif metric in {'error', 'multi_error'}:
eval_metric[index] = 'binary_error'
# do not modify args, as it causes errors in model selection tools
valid_sets = None
if eval_set is not None:
if isinstance(eval_set, tuple):
eval_set = [eval_set]
valid_sets = [None] * len(eval_set)
for i, (valid_x, valid_y) in enumerate(eval_set):
if valid_x is X and valid_y is y:
valid_sets[i] = (valid_x, _y)
else:
valid_sets[i] = (valid_x, self._le.transform(valid_y))
super().fit(X, _y, sample_weight=sample_weight, init_score=init_score, eval_set=valid_sets,
eval_names=eval_names, eval_sample_weight=eval_sample_weight,
eval_class_weight=eval_class_weight, eval_init_score=eval_init_score,
eval_metric=eval_metric, early_stopping_rounds=early_stopping_rounds,
verbose=verbose, feature_name=feature_name, categorical_feature=categorical_feature,
callbacks=callbacks, init_model=init_model)
return self
_base_doc = LGBMModel.fit.__doc__
_base_doc = (_base_doc[:_base_doc.find('group :')] # type: ignore
+ _base_doc[_base_doc.find('eval_set :'):]) # type: ignore
fit.__doc__ = (_base_doc[:_base_doc.find('eval_group :')]
+ _base_doc[_base_doc.find('eval_metric :'):])
[docs] def predict(self, X, raw_score=False, start_iteration=0, num_iteration=None,
pred_leaf=False, pred_contrib=False, **kwargs):
"""Docstring is inherited from the LGBMModel."""
result = self.predict_proba(X, raw_score, start_iteration, num_iteration,
pred_leaf, pred_contrib, **kwargs)
if callable(self._objective) or raw_score or pred_leaf or pred_contrib:
return result
else:
class_index = np.argmax(result, axis=1)
return self._le.inverse_transform(class_index)
predict.__doc__ = LGBMModel.predict.__doc__
[docs] def predict_proba(self, X, raw_score=False, start_iteration=0, num_iteration=None,
pred_leaf=False, pred_contrib=False, **kwargs):
"""Docstring is set after definition, using a template."""
result = super().predict(X, raw_score, start_iteration, num_iteration, pred_leaf, pred_contrib, **kwargs)
if callable(self._objective) and not (raw_score or pred_leaf or pred_contrib):
_log_warning("Cannot compute class probabilities or labels "
"due to the usage of customized objective function.\n"
"Returning raw scores instead.")
return result
elif self._n_classes > 2 or raw_score or pred_leaf or pred_contrib:
return result
else:
return np.vstack((1. - result, result)).transpose()
predict_proba.__doc__ = _lgbmmodel_doc_predict.format(
description="Return the predicted probability for each class for each sample.",
X_shape="array-like or sparse matrix of shape = [n_samples, n_features]",
output_name="predicted_probability",
predicted_result_shape="array-like of shape = [n_samples] or shape = [n_samples, n_classes]",
X_leaves_shape="array-like of shape = [n_samples, n_trees] or shape = [n_samples, n_trees * n_classes]",
X_SHAP_values_shape="array-like of shape = [n_samples, n_features + 1] or shape = [n_samples, (n_features + 1) * n_classes] or list with n_classes length of such objects"
)
@property
def classes_(self):
""":obj:`array` of shape = [n_classes]: The class label array."""
if not self.__sklearn_is_fitted__():
raise LGBMNotFittedError('No classes found. Need to call fit beforehand.')
return self._classes
@property
def n_classes_(self):
""":obj:`int`: The number of classes."""
if not self.__sklearn_is_fitted__():
raise LGBMNotFittedError('No classes found. Need to call fit beforehand.')
return self._n_classes
[docs]class LGBMRanker(LGBMModel):
"""LightGBM ranker.
.. warning::
scikit-learn doesn't support ranking applications yet,
therefore this class is not really compatible with the sklearn ecosystem.
Please use this class mainly for training and applying ranking models in common sklearnish way.
"""
[docs] def fit(self, X, y,
sample_weight=None, init_score=None, group=None,
eval_set=None, eval_names=None, eval_sample_weight=None,
eval_init_score=None, eval_group=None, eval_metric=None,
eval_at=(1, 2, 3, 4, 5), early_stopping_rounds=None, verbose='warn',
feature_name='auto', categorical_feature='auto',
callbacks=None, init_model=None):
"""Docstring is inherited from the LGBMModel."""
# check group data
if group is None:
raise ValueError("Should set group for ranking task")
if eval_set is not None:
if eval_group is None:
raise ValueError("Eval_group cannot be None when eval_set is not None")
elif len(eval_group) != len(eval_set):
raise ValueError("Length of eval_group should be equal to eval_set")
elif (isinstance(eval_group, dict)
and any(i not in eval_group or eval_group[i] is None for i in range(len(eval_group)))
or isinstance(eval_group, list)
and any(group is None for group in eval_group)):
raise ValueError("Should set group for all eval datasets for ranking task; "
"if you use dict, the index should start from 0")
self._eval_at = eval_at
super().fit(X, y, sample_weight=sample_weight, init_score=init_score, group=group,
eval_set=eval_set, eval_names=eval_names, eval_sample_weight=eval_sample_weight,
eval_init_score=eval_init_score, eval_group=eval_group, eval_metric=eval_metric,
early_stopping_rounds=early_stopping_rounds, verbose=verbose, feature_name=feature_name,
categorical_feature=categorical_feature, callbacks=callbacks, init_model=init_model)
return self
_base_doc = LGBMModel.fit.__doc__
fit.__doc__ = (_base_doc[:_base_doc.find('eval_class_weight :')] # type: ignore
+ _base_doc[_base_doc.find('eval_init_score :'):]) # type: ignore
_base_doc = fit.__doc__
_before_early_stop, _early_stop, _after_early_stop = _base_doc.partition('early_stopping_rounds :')
fit.__doc__ = f"""{_before_early_stop}eval_at : iterable of int, optional (default=(1, 2, 3, 4, 5))
The evaluation positions of the specified metric.
{_early_stop}{_after_early_stop}"""